WorkflowΒΆ

The workflow

digraph example { node [margin=0.05 fillcolor=cornflowerblue fontsize=12 width=0.5 style=filled]; NRNcode [shape="rectangle", fillcolor=mediumaquamarine, label="NEURON\ncode", href="../ca1.html", target="_top"]; NetworkInputs [shape="parallelogram", margin=0, label="Network spiking\nactivity of cell inputs", href="../results.html", target="_top"]; DesignedInputs [shape="parallelogram", margin=0, fillcolor=mediumpurple1, label="Designed pattern of\nactivity of cell inputs", href="../designnetinput.html", target="_top"]; NetworkConns [shape="parallelogram", margin=0, label="Network connectivity\nonto single cell", href="../results.html", target="_top"]; DesignedConns [shape="parallelogram", margin=0, fillcolor=mediumpurple1, label="Designed connectivity\nonto single cell", href="../designnetconn.html", target="_top"]; ORm [shape="circle", label="OR"]; ORp [shape="circle", label="OR"]; FullScalePrep [shape="rectangle", label="Upload & organized\nstorage of results,\nsettings, parameters, in\nstandardized format", href="../simtracker.html", target="_top"]; Versioning [shape="rectangle", fillcolor=palevioletred1, label="Code versioning\nvia Git/Mercurial", href="../codeversion.html", target="_top"]; exstim [shape="triangle", margin=0, label="Extract\nspiking\ndata", href="../tba.html", target="_top"]; exconn [shape="triangle", margin=0, label="Extract\nconnectivity\ndata", href="../tba.html", target="_top"]; stim [shape="parallelogram", label="stimulation", href="../tba.html", target="_top"]; conn [shape="parallelogram", label="connectivity", href="../tba.html", target="_top"]; simtracker [shape=none, fillcolor=none, label=<<TABLE href="../simtracker.html" target="_top"><TR><TD BGCOLOR="cornflowerblue" WIDTH="10"> </TD><TD BGCOLOR="cornflowerblue">SimTracker<BR/>Organize runs,<BR/> process, and<BR/>outputs</TD><TD BGCOLOR="cornflowerblue" WIDTH="10"> </TD></TR></TABLE>>]; nwclamp [shape=none, fillcolor=none, label=<<TABLE><TR><TD BGCOLOR="cornflowerblue" WIDTH="10"> </TD><TD BGCOLOR="cornflowerblue">Network Clamp</TD><TD BGCOLOR="cornflowerblue" WIDTH="10"> </TD></TR></TABLE>>]; PC [shape="rectangle", label="personal\ncomputer", href="../pcsetup.html", target="_top"]; ncdataout [shape="rectangle", fillcolor=yellow label="Network Clamp results\npublishable results and figures)", href="../networkclamp.html", target="_top"]; fullscaleout [shape="rectangle", fillcolor=yellow label="Full scale simulation\nresults (publishable\nresults and figures)", href="../results.html", target="_top"]; NRNcode -> Versioning; Versioning -> nwclamp; exstim -> NetworkInputs; simtracker -> FullScalePrep; FullScalePrep -> fullscaleout; fullscaleout -> exstim; fullscaleout -> exconn; NetworkInputs -> ORm; DesignedInputs -> ORm; exconn -> NetworkConns; NetworkConns -> ORp; DesignedConns -> ORp; ORm -> stim; { rank=same; ORp -> conn;} stim -> nwclamp; { rank=same; conn -> nwclamp;} nwclamp -> PC; nwclamp -> ncdataout; }