Welcome to SimTracker’s documentation!

Contents:

• Introduction
• Installation
• SimTracker Suite
  • SimTracker
  • Network Clamp
  • CellClamp
  • CellData
  • WebsiteMaker
• Settings
  • General
  • Machines
  • Groups
  • Errors
  • Outputs
  • Parameters
  • Jobscripts
• Parameters
  • NumData
  • ConnData
  • SynData
  • Stimulation
  • Connectivity
  • Machine
  • Code Version
• Models
  • CA1 Model
  • RingDemo Model
• Analyses
  • Standard Analyses
  • Custom Analyses
• Tutorials
  • Install SimTracker and run a parallel ring network simulation
  • Network Clamp a cell using the NetworkClamp tool
  • Create a new model repository using SimTracker
  • Design, execute and upload a simulation
  • Analyzing a simulation
  • Organize simulations
  • Model Design Characterization
  • Automatically analyze experimental data using CellData
  • Characterize model network components with CellClamp
  • Add model cell types and specify model cell numbers and connections
• Workflow
• Support

Indices and tables

• Index
• Search Page

Bibliography

[BRB+16]

Marianne J. Bezaire, Ivan Raikov, Kelly Burk, Dhrumil Vyas, and Ivan Soltesz. Interneuronal mechanisms of hippocampal theta oscillations in full-scale models of the CA1 circuit. eLife, 2016. doi:10.7554/eLife.18566.

[HC08]

M.L. Hines and N.T Carnevale. Translating network models to parallel hardware in NEURON. J. Neurosci. Methods, 169:425–455, 2008. doi:10.1016/j.jneumeth.2007.09.010.